"There are seven to eight minutes of the film that need to edited," said Mohammed Hanifa on behalf of the Muslim organisations, which complained that certain scenes were derogatory to their community.
Both sides are likely to come an amicable agreement.
Both sides agreed to meet after Tamil Nadu Chief Minister J. Jayalalithaa said her government would help Kamal Haasan release the film if he reaches a pact with the protesters.
The Rs.95 crore espionage thriller was set for release in Tamil and Telugu Jan 25, but a day earlier the Tamil Nadu government imposed a two-week ban on it fearing protests by Muslim groups.
The film's Hindi version, "Vishwaroop", released Friday.